---
id: "claim:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nuc-2ae8ac37ce:2feec3983a022764c65b"
kind: "claim"
title: "In the output directory (output_dir), there will be two files: matrix.cells (which contains the sample ID) and matrix.sa"
description: "In the output directory (output_dir), there will be two files: matrix.cells (which contains the sample ID) and matrix.sample.barcodes (which contains the 16-bp sample-specific barcodes)."
url: "https://sina.bio/claim/in-the-output-directory-output-dir-there-will-be-two-files-matrix-cells-c3636986"
---

# In the output directory (output_dir), there will be two files: matrix.cells (which contains the sample ID) and matrix.sa

In the output directory (output_dir), there will be two files: matrix.cells (which contains the sample ID) and matrix.sample.barcodes (which contains the 16-bp sample-specific barcodes).

## Content

In the output directory (output_dir), there will be two files: matrix.cells (which contains the sample ID) and matrix.sample.barcodes (which contains the 16-bp sample-specific barcodes).

## Metadata

```json
{
  "claim_position": 141,
  "source_publication_id": "version:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq--2024-10-10-nature-protocols",
  "source_work_id": "work:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq"
}
```

## Connections (1)

### kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq

- ID: `version:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq--2024-10-10-nature-protocols`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-si-2741fa66>

This publication contains this grounded claim.

> Intheoutputdirectory(output_dir),therewillbetwofiles:matrix. cells(whichcontainsthesampleID)andmatrix.sample.barcodes (whichcontainsthe16bpsample-specificbarcodes).

Source: 2024-10-10-nature-protocols.pdf — <https://sina.bio/source/2024-10-10-nature-protocols-pdf>