---
id: "claim:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nuc-d2d227835f:ffcae85e9b626587038f"
kind: "claim"
title: "An incompatible-indices error indicates a corrupted, non-kallisto, or version-incompatible index."
description: ""
url: "https://sina.bio/claim/an-incompatible-indices-error-indicates-a-corrupted-non-kallisto-or-ver-e5c44891"
---

# An incompatible-indices error indicates a corrupted, non-kallisto, or version-incompatible index.

## Content

An incompatible-indices error indicates a corrupted, non-kallisto, or version-incompatible index.

## Metadata

```json
{
  "claim_position": 120,
  "source_publication_id": "version:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq--2023-11-22-biorxiv",
  "source_work_id": "work:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq"
}
```

## Connections (1)

### kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq

- ID: `version:kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-single-nucleus-rna-seq--2023-11-22-biorxiv`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/kallisto-bustools-and-kb-python-for-quantifying-bulk-single-cell-and-si-70b58d03>

This publication contains this grounded claim.

> If one receives an "Error: incompatible indices", either the index file being supplied is corrupted, is not an actual kallisto index file, or was an index file generated by a version of kallisto that utilized a different index format; kallisto version 0.

Source: 2023-11-22-biorxiv.pdf — <https://sina.bio/source/2023-11-22-biorxiv-pdf>