---
id: "claim:long-read-sequencing-transcriptome-quantification-with-lr-kallisto-2024-07-19-biorxiv:31c276e8e12980312124"
kind: "claim"
title: "Longer k increased real-data alignment below 2% PacBio error and below 10% ONT error."
description: ""
url: "https://sina.bio/claim/longer-k-increased-real-data-alignment-below-2-pacbio-error-and-below-1-b27d57f6"
---

# Longer k increased real-data alignment below 2% PacBio error and below 10% ONT error.

## Content

Longer k increased real-data alignment below 2% PacBio error and below 10% ONT error.

## Metadata

```json
{
  "claim_position": 74,
  "source_publication_id": "version:long-read-sequencing-transcriptome-quantification-with-lr-kallisto--2024-07-19-biorxiv",
  "source_work_id": "work:long-read-sequencing-transcriptome-quantification-with-lr-kallisto"
}
```

## Connections (2)

### Long-read sequencing transcriptome quantification with lr-kallisto

- ID: `version:long-read-sequencing-transcriptome-quantification-with-lr-kallisto--2024-07-19-biorxiv`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/long-read-sequencing-transcriptome-quantification-with-lr-kallisto-d4acdfcd>

This publication contains this grounded claim.

> In real data (both PacBio and ONT), we observed an increased rate of alignment of reads with a longer k-mer length for
> PacBio sequencing error rate less than 2% and for ONT sequencing error rate less than 10%.

Source: 2024-07-19-biorxiv.pdf — <https://sina.bio/source/2024-07-19-biorxiv-pdf>

### Increasing k from 31 to 63 simplified the transcript graph and its compatibility classes while improving accuracy, effic

- ID: `result:long-read-sequencing-transcriptome-quantification-with-lr-kallisto-2024-07-19-biorxiv:8d01ffae708cd3aec594`
- Kind: `result`
- Direction: `incoming`
- URL: <https://sina.bio/result/increasing-k-from-31-to-63-simplified-the-transcript-graph-and-its-comp-f3923c0a>

This claim supports this result.