---
id: "claim:modular-efficient-and-constant-memory-single-cell-rna-seq-preprocessing-2021-04-60a02544e2:51279c552739ced2898a"
kind: "claim"
title: "Corresponding Cell Ranger and kallisto-bustools cells were compared using L1 distance."
description: ""
url: "https://sina.bio/claim/corresponding-cell-ranger-and-kallisto-bustools-cells-were-compared-usi-829b134d"
---

# Corresponding Cell Ranger and kallisto-bustools cells were compared using L1 distance.

## Content

Corresponding Cell Ranger and kallisto-bustools cells were compared using L1 distance.

## Metadata

```json
{
  "claim_position": 95,
  "source_publication_id": "version:modular-efficient-and-constant-memory-single-cell-rna-seq-preprocessing--2021-04-01-nature-biotechnology",
  "source_work_id": "work:modular-efficient-and-constant-memory-single-cell-rna-seq-preprocessing"
}
```

## Connections (1)

### Modular, efficient and constant-memory single-cell RNA-seq preprocessing

- ID: `version:modular-efficient-and-constant-memory-single-cell-rna-seq-preprocessing--2021-04-01-nature-biotechnology`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/modular-efficient-and-constant-memory-single-cell-rna-seq-preprocessing>

This publication contains this grounded claim.

> To investigate the similarity of Cell Ranger to kallisto bustools, the l1 distance between each corresponding kallisto bustools and Cell Ranger cell was computed. The distance to the nearest kallisto bustools cell was also measured. To visualize the Cell Ranger and kallisto count matrices, t-SNE was performed on the data projected to the ten principal components computed for each dataset using the opentSNE package (https://github.com/pavlin-policar/openTSNE/) with perplexity=30, metric=Euclidean, random_state=42 and n_iter=750.

Source: 2021-04-01-nature-biotechnology.pdf — <https://sina.bio/source/2021-04-01-nature-biotechnology-pdf>