---
id: "claim:quantifying-orthogonal-barcodes-for-sequence-census-assays-2022-10-10-biorxiv:522b02a55adf0742a8bd"
kind: "claim"
title: "kITE pseudoaligns reads and collapses errors with kallisto and bustools."
description: ""
url: "https://sina.bio/claim/kite-pseudoaligns-reads-and-collapses-errors-with-kallisto-and-bustools"
---

# kITE pseudoaligns reads and collapses errors with kallisto and bustools.

## Content

kITE pseudoaligns reads and collapses errors with kallisto and bustools.

## Metadata

```json
{
  "claim_position": 65,
  "source_publication_id": "version:quantifying-orthogonal-barcodes-for-sequence-census-assays--2022-10-10-biorxiv",
  "source_work_id": "work:quantifying-orthogonal-barcodes-for-sequence-census-assays"
}
```

## Connections (2)

### Quantifying orthogonal barcodes for sequence census assays

- ID: `version:quantifying-orthogonal-barcodes-for-sequence-census-assays--2022-10-10-biorxiv`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/quantifying-orthogonal-barcodes-for-sequence-census-assays-cc9d35e3>

This publication contains this grounded claim.

> Figure 1: kITE workflow. The mismatch map is generated from the feature barcode whitelist and indexed with kallisto. Reads are pseudoaligned and error-collapsed with kallisto and bustools to form a cells x features matrix.

Source: 2022-10-10-biorxiv.pdf — <https://sina.bio/source/2022-10-10-biorxiv-pdf>

### kITE aligns, error-corrects, groups, and counts orthogonal barcode reads with kallisto and bustools using a mismatch-exp

- ID: `result:quantifying-orthogonal-barcodes-for-sequence-census-assays-2022-10-10-biorxiv:5c3d332fcd1178c5ce1e`
- Kind: `result`
- Direction: `incoming`
- URL: <https://sina.bio/result/kite-aligns-error-corrects-groups-and-counts-orthogonal-barcode-reads-w-f914b348>

This claim supports this result.