---
id: "claim:quantifying-orthogonal-barcodes-for-sequence-census-assays-2024-01-05-bioinform-db2d59bea4:71b73026eeb002155de2"
kind: "claim"
title: "kITE and Cell Ranger quantifications averaged Pearson correlation 0.99 across read depths."
description: ""
url: "https://sina.bio/claim/kite-and-cell-ranger-quantifications-averaged-pearson-correlation-0-99-9cc8d201"
---

# kITE and Cell Ranger quantifications averaged Pearson correlation 0.99 across read depths.

## Content

kITE and Cell Ranger quantifications averaged Pearson correlation 0.99 across read depths.

## Metadata

```json
{
  "claim_position": 26,
  "source_publication_id": "version:quantifying-orthogonal-barcodes-for-sequence-census-assays--2024-01-05-bioinformatics-advances",
  "source_work_id": "work:quantifying-orthogonal-barcodes-for-sequence-census-assays"
}
```

## Connections (2)

### Quantifying orthogonal barcodes for sequence census assays

- ID: `version:quantifying-orthogonal-barcodes-for-sequence-census-assays--2024-01-05-bioinformatics-advances`
- Kind: `publication`
- Direction: `incoming`
- URL: <https://sina.bio/publication/quantifying-orthogonal-barcodes-for-sequence-census-assays-f4f3e077>

This publication contains this grounded claim.

> We used kallisto bustools and a mismatch index to
> pseudoalign the target sequences (Appendix A.1.1) and found
> high concordance between our method and Cell Ranger
> across varying read depths, with an average Pearson correla
> tion of 0.99 (Fig. 2a–f).

Source: 2024-01-05-bioinformatics-advances.pdf — <https://sina.bio/source/2024-01-05-bioinformatics-advances-pdf>

### For 10x Feature Barcoding, kITE matched Cell Ranger with mean Pearson correlation 0.99 while running five times faster a

- ID: `result:quantifying-orthogonal-barcodes-for-sequence-census-assays-2024-01-05-bioinform-db2d59bea4:62da5ad305324c02f5ec`
- Kind: `result`
- Direction: `incoming`
- URL: <https://sina.bio/result/for-10x-feature-barcoding-kite-matched-cell-ranger-with-mean-pearson-co-3325bafe>

This claim supports this result.