--- id: "claim:the-impact-of-package-selection-and-versioning-on-single-cell-rna-seq-analysis-3717bd8a9e:92e2f430aa73e169ea32" kind: "claim" title: "Default adjusted-p-value Spearman correlation was 0.848 and aligned Seurat-like arguments nearly eliminated differences." description: "" url: "https://sina.bio/claim/default-adjusted-p-value-spearman-correlation-was-0-848-and-aligned-seu-1a205244" --- # Default adjusted-p-value Spearman correlation was 0.848 and aligned Seurat-like arguments nearly eliminated differences. ## Content Default adjusted-p-value Spearman correlation was 0.848 and aligned Seurat-like arguments nearly eliminated differences. ## Metadata ```json { "claim_position": 36, "source_publication_id": "version:the-impact-of-package-selection-and-versioning-on-single-cell-rna-seq-analysis--2026-04-cell-systems", "source_work_id": "work:the-impact-of-package-selection-and-versioning-on-single-cell-rna-seq-analysis" } ``` ## Connections (2) ### The impact of package selection and versioning on single-cell RNA-seq analysis - ID: `version:the-impact-of-package-selection-and-versioning-on-single-cell-rna-seq-analysis--2026-04-cell-systems` - Kind: `publication` - Direction: `incoming` - URL: This publication contains this grounded claim. > The Spearman correlation of adjusted p > values between Seurat and Scanpy was 0.848 Source: 2026-04-cell-systems.pdf — > When function arguments were aligned to be like > Seurat, virtually all differences in adjusted p value disappeared Source: 2026-04-cell-systems.pdf — ### Default packages produce extreme log-fold-change discrepancies and adjusted-p-value threshold flips, while aligning Seur - ID: `result:the-impact-of-package-selection-and-versioning-on-single-cell-rna-seq-analysis-3717bd8a9e:f1cb1aa1aa59e1a3a248` - Kind: `result` - Direction: `incoming` - URL: This claim supports this result.